← all jobs

[Remote] Software Engineer II

Work from home Full-time role Hiring

Note: The job is a remote job and is open to candidates in USA. The Allen Institute accelerates science for a healthier world through large-scale research in biology, the brain, cells, and immune system, sharing tools and data openly. The Software Engineer II will build and maintain web-based and Python tools for processing and visualizing large-scale 5D biological imaging data, while contributing to software design, optimization, testing, collaboration, and deployment.

Responsibilities

  • Front end: create and maintain core functionality of image analysis, visualization, and data management tools
  • Implement front end design solutions to specification
  • Develop Python code to directly assist scientists to simplify and scale their work
  • Optimize loading, saving, and converting large image arrays with metadata
  • Collect requirements and find opportunities for new tools
  • Actively participate in collaboration with design, giving thoughtful input on technical approach and/or alternatives
  • Perform software development duties using best practices - follow industry standards, develop unit tests, participate in code reviews, etc
  • Follow the Allen Institute’s software management and deployment standards including source code management, issue tracking, staging and deployment standards, and documentation

Skills

  • * Bachelor's degree in computer science, or equivalent combination of degree and experience
  • * Minimum 1 year of related experience
  • * Experience with Typescript/CSS/React and deploying web applications
  • * Experience with Python for scientific computing; for example: numpy, pandas, scipy, xarray, dask
  • * Experience or interest in performance optimization and scalability
  • * Familiarity with both relational and document databases
  • * Solid foundation in matrices and linear algebra
  • * This role is currently able to work both remotely and onsite in a hybrid work environment. We are a Washington State employer, and the primary work location for all Allen Institute employees is 615 Westlake Ave N.; any remote work must be performed in Washington State
  • * Experience working on an agile development team
  • * Enthusiasm for working closely with cross-functional colleagues and stakeholders
  • * Experience building and maintaining server-side applications, including data access APIs
  • * Interest in, or experience with, 3D graphics such as OpenGL, Vulkan, DirectX, [three.js](http://three.js/)
  • * Experience with AI, running ML models and evaluating results
  • * Experience with build processes and continuous integration such as GitHub Actions
  • * Familiarity with C++
  • * Strong communication skills

Benefits

  • Technical guidance and professional growth opportunities in a supportive environment
  • Hybrid work environment with the ability to work remotely and onsite; any remote work must be performed in Washington State
  • Employees (and their families) are eligible to enroll in medical, dental, vision, and basic life insurance benefits per eligibility rules outlined in the Allen Institute’s Benefits Guide
  • Employees are eligible to enroll in the Allen Institute’s 401k plan
  • Paid time off is available as outlined in the Allen Institute’s Benefits Guide

Company Overview

  • The Allen Institute is dedicated to answering some of the biggest questions in bioscience and accelerating research worldwide. It was founded in 2003, and is headquartered in Seattle, Washington, USA, with a workforce of 501-1000 employees. Its website is https://alleninstitute.org/.
  • Company H1B Sponsorship

  • Allen Institute has a track record of offering H1B sponsorships, with 12 in 2026, 41 in 2025, 32 in 2024, 24 in 2023, 26 in 2022, 17 in 2021, 7 in 2020. Please note that this does not guarantee sponsorship for this specific role.
  • More open positions

    [Remote] Systems Administrator - Microsoft 365

    Work from home Full-time role

    [Remote] Senior Legal Counsel, Khan Kids

    Work from home Full-time role

    [Remote] Data Analyst (53711)

    Work from home Full-time role

    [Remote] Senior DevOps Engineer

    Work from home Full-time role

    [Remote] Senior Academic Designer

    Work from home Full-time role

    [Remote] Senior Associate, Community Partnership Operations

    Work from home Full-time role

    GAAP Advisory - Senior Consultant

    Work from home Full-time role

    Sales

    Work from home Full-time role

    High-Cost Claimant Review Unit Nurse Auditor (Remote in AZ)

    Work from home Full-time role

    Data Engineer (Remote / Contract)

    Work from home Full-time role

    Client Support Representative I

    Work from home Full-time role

    Sr Full Stack Engineer- Node.JS - US SaaS startup | Remote

    Work from home Full-time role

    Senior Manager, Strategy & Technology

    Work from home Full-time role

    Physical Therapist

    Work from home Full-time role

    Principal Consultant - HCM Training Developer & Instructional Design

    Work from home Full-time role

    Mid-Market Account Executive - Central (Spanish / Portuguese Speaking)

    Work from home Full-time role

    Java/Full Stack Developer - Remote

    Work from home Full-time role

    Técnico Eletrônico - Cascavel, PR

    Work from home Full-time role

    Art Director (Remote)

    Work from home Full-time role

    PRODIGY Consulting GmbH: Werkstudent (m/w/d) Data Structurer – Daten, Modelle &

    Work from home Full-time role

    Managing Director of Development

    Work from home Full-time role